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R Yoshida

First name:
R
Last name:
Yoshida
Schardl, C. ., Young, C. ., Hesse, U. ., Amyotte, S. ., Andreeva, K. ., Calie, P. ., … Zeng, Z. . Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genetics, 9(2), e1003323. https://doi.org/10.1371/journal.pgen.1003323 (Original work published 2013)
Page, R. ., Yoshida, R. ., & Zhang, L. . (2020). Tropical principal component analysis on the space of phylogenetic trees. Bioinformatics (Oxford, England), 36(17), 4590-4598. https://doi.org/10.1093/bioinformatics/btaa564 (Original work published 2020)
Yasui, N. ., Vogiatzis, C. ., Yoshida, R. ., & Fukumizu, K. . (1969). imPhy: Imputing Phylogenetic Trees with Missing Information Using Mathematical Programming. IEEE/ACM/Transactions/on/Computational/Biology/and/Bioinformatics, 17(4), 1222-1230. https://doi.org/10.1109/TCBB.2018.2884459 (Original work published 1969)
Kang, Q. ., Schardl, C. ., Moore, N. ., & Yoshida, R. . (2018). CURatio: Genome-wide phylogenomic analysis method using ratios of total branch lengths. IEEE/ACM/Transactions/on/Computational/Biology/and/Bioinformatics. https://doi.org/10.1109/TCBB.2018.2878564 (Original work published 2018)
Yoshida, R. ., Zhang, L. ., & Zhang, X. . (2019). Tropical Principal Component Analysis and Its Application to Phylogenetics. Bulletin of Mathematical Biology, 81(2), 568-597. https://doi.org/10.1007/s11538-018-0493-4
Nye, T. ., Tang, X. ., Weyenberg, G. ., & Yoshida, R. . (2017). Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees. Biometrika, 104(4), 901-922. https://doi.org/10.1093/biomet/asx047
Weyenberg, G. ., Yoshida, R. ., & Howe, D. . (1969). Normalizing Kernels in the Billera-Holmes-Vogtmann Treespace. IEEE/ACM/Transactions/on/Computational/Biology/and/Bioinformatics, 14(6), 1359-1365. https://doi.org/10.1109/TCBB.2016.2565475 (Original work published 1969)
Yoshida, R. ., & Nei, M. . (2016). Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes. Molecular Biology and Evolution, 33(6), 1618-24. https://doi.org/10.1093/molbev/msw042
Bachoura, A. ., Yoshida, R. ., Lattermann, C. ., & Kamineni, S. . Late removal of titanium hardware from the elbow is problematic. ISRN Orthopedics, 2012, 256239. https://doi.org/10.5402/2012/256239 (Original work published 2012)
Weyenberg, G. ., Huggins, P. ., Schardl, C. ., Howe, D. ., & Yoshida, R. . (2014). kdetrees: Non-parametric estimation of phylogenetic tree distributions. Bioinformatics (Oxford, England), 30(16), 2280-7. https://doi.org/10.1093/bioinformatics/btu258 (Original work published 2014)