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D Murrugarra

First name:
D
Last name:
Murrugarra
Kadelka, C., Murrugarra, D., & Laubenbacher, R. (2013). Stabilizing gene regulatory networks through feedforward loops. Chaos (Woodbury, N.y.), 23(2), 025107. https://doi.org/10.1063/1.4808248
Murrugarra, D., Veliz-Cuba, A., Aguilar, B., Arat, S., & Laubenbacher, R. (2012). Modeling stochasticity and variability in gene regulatory networks. Eurasip Journal On Bioinformatics & Systems Biology, 2012(1), 5. https://doi.org/10.1186/1687-4153-2012-5 (Original work published 2012)
Murrugarra, D., & Laubenbacher, R. (2011). Regulatory patterns in molecular interaction networks. Journal Of Theoretical Biology, 288, 66-72. https://doi.org/10.1016/j.jtbi.2011.08.015 (Original work published 2011)
Hinkelmann, F., Murrugarra, D., Jarrah, A. S., & Laubenbacher, R. (2011). A mathematical framework for agent based models of complex biological networks. Bulletin Of Mathematical Biology, 73(7), 1583-602. https://doi.org/10.1007/s11538-010-9582-8
Murrugarra, D., & Dimitrova, E. S. (2015). Molecular network control through boolean canalization. Eurasip Journal On Bioinformatics & Systems Biology, 2015(1), 9. https://doi.org/10.1186/s13637-015-0029-2
Murrugarra, D., Veliz-Cuba, A., Aguilar, B., & Laubenbacher, R. (2016). Identification of control targets in Boolean molecular network models via computational algebra. Bmc Systems Biology, 10(1), 94. https://doi.org/10.1186/s12918-016-0332-x (Original work published 2016)
Murrugarra, D., Miller, J., & Mueller, A. N. Estimating Propensity Parameters Using Google PageRank and Genetic Algorithms. Frontiers In Neuroscience, 10, 513. https://doi.org/10.3389/fnins.2016.00513 (Original work published 2016)
Rogers, E., Murrugarra, D., & Heitsch, C. (2017). Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter Perturbations. Biophysical Journal, 113(2), 321-329. https://doi.org/10.1016/j.bpj.2017.05.026 (Original work published 2017)
Voss, R., Murrugarra, D., & Jensen, T. B. (2018). Transcriptional correlates of proximal-distal identify and regeneration timing in axolotl limbs. Comparative Biochemistry And Physiology. Toxicology & Pharmacology : Cbp, 208, 53-63. https://doi.org/10.1016/j.cbpc.2017.10.010
Vieira, S., Laubenbacher, R. C., & Murrugarra, D. (2019). Control of Intracellular Molecular Networks Using Algebraic Methods. Bulletin Of Mathematical Biology, 82(1), 2. https://doi.org/10.1007/s11538-019-00679-w (Original work published 2019)